"Phylogeny-Driven Approaches to Genomics and Metagenomics"
Talk by Jonathen Eisen (@phylogenomics) from UC Davis. UW Department of Genome Sciences 10/23/2013
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Jonathan Eisen, Ph.D. — UC Davis Genome Center
Professor, Department of Evolution and Ecology, Department of Microbiology and Immunology, and UC Davis Genome Center, University of Ca… -
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Off to Seattle – giving a talk tomorrow at UW gs.washington.edu/news/seminars ….… -
@phylogenomics looking forward to it! -
Updating calendar because @phylogenomics is “Off to Seattle – giving a talk tomorrow at UW gs.washington.edu/news/seminars ….… …” -
Why yes I think I am ready for my talk at UWashington on 1st day of World Series & during #openaccess week http://twitter.com/phylogenomics/status/393040137333907458/photo/1 … -
@phylogenomics I don’t think anyone cares about baseball here. 😉 -
@phylogenomics Wow. With that mirror arrangement it’s like infinite universes of Eisens. All with smartphones. We are not ready! -
@MicroWavesSci I needed the Plos1 to show up on the back and the #redsox in the front
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@phylogenomics I’m trying to imagine what open access baseball would even be -
@phylogenomics Ah, I didn’t notice the PLOS plug! Brain just said “yep, jersey, name, number, check”. Excellent cross-promotion.
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@mbeisen Is there anything I should know (read: dirt) about @phylogenomics before introducing him this afternoon? -
@msr2009 @phylogenomics he’s embarrassed himself so much in public there’s not really anything i can add -
@phylogenomics I will try to attend. Do you have a hashtag for it? -
About to go see @phylogenomics give a talk to my dept! Apparently at lunch he told my classmates to join twitter for the science. I approve! -
@jennifurret @phylogenomics in the room too. Are you live-tweeting?
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@GonzalezIvanF @jennifurret Live tweet folks! Not that it’s my topic but if you can’t live tweet a @phylogenomics talk whose can you?
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.@GonzalezIvanF @phylogenomics I’ve never livetweeted dept talks because I’ve been afraid of sharing unpublished data, but maybe that’s me?
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@jennifurret @phylogenomics I always take that as a main concern, I make sure only share what is published and ask speaker first.
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Phylogeny-Driven approaches to Genomics and Metagenomics talk by @phylogenomics starting soon at @UW cc @UWGenOM @UWMedicineNews
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Jonathan Eisen (@phylogenomics) starts talk bit.ly/18cZUpx with his essay on 9th grade describe one step in evolution of bacterium
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.@phylogenomics wearing red sox shirt at genomics talk @uw today http://twitter.com/GonzalezIvanF/status/393145292851142656/photo/1 … -
You can separate mixed organism by using PCR analysis of ribosome RNA (rRNA) doesn matter if they are in the same tube @phylogenomics
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Now sequencing is going crazy. Studies are much faster today, and relatively inexpensive (100,000 sequences for couple of $) @phylogenomics
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Citizen science projects enabled by cheap microbial sequencing. ie MERCCUR,or sampling cell phone surfaces- @phylogenomics
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Project MERCCURI citizen science update – SciStarter Blog
This piece was originally posted on Science Cheerleader. Project Update: Project MERCCURI is a collaboration of the UC Davis microBEnet w… -
uBiome
uBiome gives the public access to cutting edge DNA sequencing technology to understand the microbiome. You can find out what's in y… -
Can we build phylogenetic trees with all this information that is coming from sequencing? @phylogenomics
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Phylogenetic trees help characterizing/predicting function of genes, for detecting errors too- @phylogenomics
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Non-homology predictions: phylogenetic profiling clusters genes with know genes usually associated. @phylogenomics correct me if wrong.
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Using phylogeny for metagenome data: you are free from only ribosome RNA genes. Protein coding genes add a new dimension @phylogenomics
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Most of the diversity of life comes from uncultured organisms. For @phylogenomics improving phylogenomics means to explore this wild area.
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Final minutes of @phylogenomics mentions data techniques and automation for phylogenetic analysis of metagenome. The Future is here.
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Talking about is Red Sox with Plos1 in the back continued:
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@phylogenomics At first I thought you were wearing a Pujols Jersey, and was extremely confused. -
From UW today: @phylogenomics suggests if you are lost in graduate school, find a map and then provided awesome evidence as to why -
Great talk by @phylogenomics today at UW! Thanks! -
@PLadd01 @phylogenomics So long as you’ve scouted the territory, suuurreee. That’s a swell idea. -
What does he mean by find a map? MT “@PLadd01: From UW today: @phylogenomics suggests if you are lost in graduate school, find a map” -
@mt_ur_mind @PLadd01 find some way to guide your thinking …
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.@phylogenomics I would have loved to have @jennifurret as a voice with expertise in subject. One-person tweets never give whole picture.
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Additional reading:
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Genome Biology | Full text | A simple, fast, and accurate method of phylogenomic inference
The explosive growth of genomic data provides an opportunity to make increased use of protein markers for phylogenetic inference. We have… -
An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
Formal Correction: This article has been formally corrected to address the following errors. There was an error in the Funding section. T…
